Workflow: deal_with_functional_annotation.cwl

Fetched 2024-02-28 02:16:19 GMT
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Inputs

ID Type Title Doc
cds File
rna File
fasta File
ko_file String
IPS_table File
go_config String
ips_header String
diamond_table File
hmmscan_table File
output_gff_gz File
diamond_header String
eggnog_orthologs File
hmmsearch_header String
output_gff_index File
eggnog_annotations File
antismash_geneclusters_txt File (Optional)

Steps

ID Runs Label Doc
pfam
/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/tools/Pfam-Parse/pfam_annotations.cwl (CommandLineTool)
Parse Pfam hits from Interpro annotation output
go_summary
/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/tools/GO-slim/go_summary.cwl (CommandLineTool)
chunking_tsv
/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/utils/result-file-chunker/result_chunker.cwl (CommandLineTool)
header_addition
/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/utils/add_header/add_header.cwl (CommandLineTool)
write_summaries
compression_func_ann
/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/utils/pigz/gzip.cwl (CommandLineTool)
move_to_functional_annotation_folder
/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/utils/return_directory.cwl (ExpressionTool)

Outputs

ID Type Label Doc
stats Directory
summary_antismash File (Optional)
functional_annotation_folder Directory
Permalink: https://w3id.org/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/workflows/subworkflows/assembly/deal_with_functional_annotation.cwl