Workflow: QIIME2 Step 3
Fetched 2023-01-04 19:29:04 GMT
Verified with cwltool version 3.1.20221201130942
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| table | File | ||
| rooted_tree | File | ||
| sample_metadata | File | ||
| rarefaction_max_depth | Integer | ||
| diversity_sampling_depth | Integer |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| alpha_rarefaction | qiime2 rarefaction visualization |
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
|
| alpha_beta_diversity | qiime2 diversity analyses |
Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| alpha_rarefaction_file | File | ||
| core_metrics_directory | Directory | ||
| bray_curtis_emperor_file | File | ||
| unweighted_unifrac_emperor_file | File | ||
| evenness_group_significance_file | File | ||
| faith_pd_group_significance_file | File | ||
| unweighted_unifrac_body_site_significance_file | File | ||
| unweighted_unifrac_subject_group_significance_file | File |
Permalink:
https://w3id.org/cwl/view/git/ef08cb00bd55b4c712645d171dbc691e01ed6165/packed/qiime2-step3-alpha-analysis.cwl?part=main
