Workflow: qiime2 diversity analyses

Fetched 2023-01-04 20:44:33 GMT

Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

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Inputs

ID Type Title Doc
table File
rooted_tree File
sampling_depth Integer
sample_metadata File
bray_curtis_emperor_filename String
unweighted_unifrac_emperor_filename String
evenness_group_significance_filename String
faith_pd_group_significance_filename String
unweighted_unifrac_body_site_significance_filename String
unweighted_unifrac_subject_group_significance_filename String

Steps

ID Runs Label Doc
bray_curtis_emperor
qiime2-step3-alpha-analysis.cwl#emperor-plot.cwl (CommandLineTool)
qiime2: emperor visualization and ordination
generate_core_metrics
qiime2-step3-alpha-analysis.cwl#diversity-core-metrics-phylogenetic.cwl (CommandLineTool)
qiime2: Applies a collection of diversity metrics (both phylogenetic and non-phylogenetic) to a feature table.
unweighted_unifrac_emperor
qiime2-step3-alpha-analysis.cwl#emperor-plot.cwl (CommandLineTool)
qiime2: emperor visualization and ordination
evenness_group_significance
qiime2-step3-alpha-analysis.cwl#diversity-alpha-group-significance.cwl (CommandLineTool)
qiime2: Visually and statistically compare groups of alpha diversity values
faith_pd_group_significance
qiime2-step3-alpha-analysis.cwl#diversity-alpha-group-significance.cwl (CommandLineTool)
qiime2: Visually and statistically compare groups of alpha diversity values
unweighted_unifrac_body_site_significance
qiime2-step3-alpha-analysis.cwl#diversity-beta-group-significance.cwl (CommandLineTool)
qiime2: Determine whether groups of samples are significantly different from one another using a permutation-based statistical test
unweighted_unifrac_subject_group_significance
qiime2-step3-alpha-analysis.cwl#diversity-beta-group-significance.cwl (CommandLineTool)
qiime2: Determine whether groups of samples are significantly different from one another using a permutation-based statistical test

Outputs

ID Type Label Doc
core_metrics_directory Directory
bray_curtis_emperor_file File
unweighted_unifrac_emperor_file File
evenness_group_significance_file File
faith_pd_group_significance_file File
unweighted_unifrac_body_site_significance_file File
unweighted_unifrac_subject_group_significance_file File
Permalink: https://w3id.org/cwl/view/git/ef08cb00bd55b4c712645d171dbc691e01ed6165/packed/qiime2-step3-alpha-analysis.cwl?part=qiime2-06-alpha-beta-diversity.cwl