Explore Workflows
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wf_self_consistency_ratio.cwl
Computes the self-consistency ratio (see Gabe's protocols paper, or CHIP SEQ). Given two replicates, split each and perform IDR on each fragment. Returns the ratio of max(N1, N2)/min(N1, N2) where N1, N2 are the numbers of reproducible peaks found between each rep split pair. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_self_consistency_ratio.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 9c57dba |
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stability.cwl
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https://github.com/CERIT-SC/fireprot.git
Path: stability.cwl Branch/Commit ID: master |
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sc_atac_seq_prep_process_init.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_prep_process_init.cwl Branch/Commit ID: develop |
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compile1.cwl#main
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https://github.com/common-workflow-language/workflows.git
Path: workflows/compile/compile1.cwl Branch/Commit ID: master Packed ID: main |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/david4096/oxog-dockstore-tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: develop |
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WGS QC workflow
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https://github.com/mnneveau/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 3f85843 |
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bqsr-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/bqsr-distr.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: fa86fce |
