Workflow: bwameth_mulitlib_start_with_trimmed.cwl
Fetched 2025-11-11 13:28:33 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| ref | File | ||
| pbat | Boolean | ||
| read1 | 160450f146f67e0b82018aeaf654a191[] | ||
| read2 | fbb8db996b62a8765d52681cfe9b3e7a[] | ||
| threads | Integer | ||
| output_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| methydackel |
tools/methydackel.cwl
(CommandLineTool)
|
||
| merge_and_sort |
../../tools/samtools_merge_and_sort.cwl
(CommandLineTool)
|
||
| samtools_index |
../../tools/samtools_index.cwl
(CommandLineTool)
|
||
| bwameth_align_merge_sort_dedup |
tools/bwameth_align_merge_sort_dedup.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| call | File | ||
| bam_sorted_indexed | File | ||
| picard_markdup_log | File[] | ||
| picard_markdup_stat | File[] |
Permalink:
https://w3id.org/cwl/view/git/1416ade270d1b990087e39c6680464c12cf564cc/workflows/bwameth/bwameth_mulitlib_start_with_trimmed.cwl
