Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cwlsite.cwl

https://github.com/common-workflow-language/cwl-website.git

Path: site/cwlsite.cwl

Branch/Commit ID: master
workflow graph collate_unique_rRNA_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_rRNA_headers.cwl

Branch/Commit ID: ef3c7b2
workflow graph create_snap_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: create_snap_and_analyze.cwl

Branch/Commit ID: bb023f9
workflow graph bacterial_orthology_cond

https://github.com/ncbi/pgap.git

Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl

Branch/Commit ID: dev
workflow graph test-data2.cwl

https://github.com/kyusque/abmp_log_dump2pieda.git

Path: test-data2.cwl

Branch/Commit ID: master
workflow graph Quality assessment, amplicon classification and functional prediction

Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_ngtax_picrust2.cwl

Branch/Commit ID: master
workflow graph snps_and_indels.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/subworkflows/snps_and_indels.cwl

Branch/Commit ID: master
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-wf.cwl

Branch/Commit ID: main
workflow graph Detect Variants workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: detect_variants/detect_variants.cwl

Branch/Commit ID: master
workflow graph gathered exome alignment and somatic variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_gathered.cwl

Branch/Commit ID: downsample_and_recall