Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph variant-calling-pair.cwl

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/variant-calling-pair.cwl

Branch/Commit ID: master
workflow graph exome alignment and somatic variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph module-4

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-4.cwl

Branch/Commit ID: 2.4.x
workflow graph Genome conversion and annotation

Workflow for genome annotation from EMBL format

 https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_sapp_microbes.cwl

Branch/Commit ID: master
workflow graph BLASTP, parse, dump FASTA

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_three_step.cwl

Branch/Commit ID: master
workflow graph index sim seq

create sorted / filtered similarity file with feature sequences, and index by md5

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/index_sim_seq.workflow.cwl

Branch/Commit ID: master
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/svonworl/oxog-dockstore-tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines13-wf.cwl

Branch/Commit ID: main
workflow graph germline.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/germline.cwl

Branch/Commit ID: master
workflow graph dynresreq-workflow-inputdefault.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/dynresreq-workflow-inputdefault.cwl

Branch/Commit ID: master