Workflow: metaphlan_wfl.cwl
Fetched 2024-04-24 13:14:11 GMT
Verified with cwltool version 3.1.20221201130942
# Metaphlan-ISBCGC # Overview This is an example of how to add a description to a workflow. This uses markdown and can show things like images and links.
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bt2 | String | ||
| dpi | Integer | ||
| PNGFILE | String | ||
| profOut | String | ||
| TREENAME | String | ||
| ANNOTNAME | String | ||
| TARBZFILE | File | ||
| bowtie2db | String | ||
| inputtype | String | ||
| bowtie2exe | String | ||
| bowtie2out | String | ||
| stdoutflag | String | ||
| OUTFILENAME | String | ||
| ANNOTOUTNAME | String | ||
| UNZIPPEDFILENAME | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| untar |
tool1.tarbz.cwl
(CommandLineTool)
|
# Metaphlan-ISBCGC |
|
| profile |
tool2.profile.cwl
(CommandLineTool)
|
||
| annotate |
tool4.annotate.cwl
(CommandLineTool)
|
||
| graphlan |
tool5.graphlan.cwl
(CommandLineTool)
|
||
| meta2graph |
tool3.meta2graph.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| graphlanoutput | File |
Permalink:
https://w3id.org/cwl/view/git/e03c029da6f291cda83667e8a92d5453af9b45f4/metaphlan_wfl.cwl
