Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph metrics-flow.cwl

Run metrics workflow

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/metrics-flow.cwl

Branch/Commit ID: master
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: develop
workflow graph pindel parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: master
workflow graph calculate_contamination_workflow.cwl

GATK4.1.2 Calculate tumor-normal contamination workflow

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: subworkflows/calculate_contamination_workflow.cwl

Branch/Commit ID: master
workflow graph accessioning-prediction_subwf.cwl

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/assembly/accessioning-prediction_subwf.cwl

Branch/Commit ID: eosc-life-gos
workflow graph no-outputs-wf.cwl

Workflow without outputs.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/no-outputs-wf.cwl

Branch/Commit ID: master
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: SGDP-recall-CGC/SGDP-recall-cgc/wf-alignment.cwl

Branch/Commit ID: master
workflow graph Seed Protein Alignments

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed_seqids.cwl

Branch/Commit ID: dev
workflow graph cram-get-fasta.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/cram-get-fasta.cwl

Branch/Commit ID: master
workflow graph Run genomic CMsearch (5S rRNA)

https://github.com/slottad/pgap.git

Path: bacterial_noncoding/wf_gcmsearch.cwl

Branch/Commit ID: master