Explore Workflows
View already parsed workflows here or click here to add your own
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word-mapping-test-files-wf.cwl#align-texts-wf.cwl
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Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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UW GAC (GENESIS) VCF to GDS
**VCF to GDS** workflow converts VCF or BCF files into Genomic Data Structure (GDS) format. GDS files are required by all workflows utilizing the GENESIS or SNPRelate R packages. _Filename requirements_: The input file names should follow the pattern <A>chr<X>.<y> For example: 1KG_phase3_subset_chr1.vcf.gz Some of the tools inside the workflow infer the chromosome number from the file by expecting this pattern of file name. |
Path: vcftogds/vcf-to-gds-wf.cwl Branch/Commit ID: master |
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SARS_psm_workflow.cwl
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Path: SARS_psm_workflow.cwl Branch/Commit ID: master |
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ATACseq.cwl
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Path: CWL/workflows/ATACseq.cwl Branch/Commit ID: master |
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post-correct-dir.cwl
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Path: ochre/cwl/post-correct-dir.cwl Branch/Commit ID: master |
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Replace legacy AML Trio Assay
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Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: master |
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bqsr_workflow.cwl
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Path: workflows/BQSR/bqsr_workflow.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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Path: workflows/emg-assembly.cwl Branch/Commit ID: 56dafa4 |
