Workflow: gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl
Fetched 2024-05-18 13:08:49 GMT
Verified with cwltool version 3.1.20221201130942
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Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| chunks | Integer | ||
| library_crams | File[] | ||
| intersect_file | File | ||
| output_basename | String | ||
| ref_fasta_files | File[] | ||
| haploid_chromosome_regex | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| haplotype_caller |
gatk-4.0.0.0-library-cram-to-gvcfs.cwl
(Workflow)
|
||
| joint_calling_diploid |
gatk-4.0.0.0-joint-calling.cwl
(Workflow)
|
||
| joint_calling_haploid |
gatk-4.0.0.0-joint-calling.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_diploid | File | ||
| output_haploid | File |
Permalink:
https://w3id.org/cwl/view/git/c822e40575ecd7fc65626a73363f3bbc193b9a74/cwl/workflows/gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl
