Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph env-wf2.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/env-wf2.cwl

Branch/Commit ID: 551d58d409ef2a0fa2e3ab93b85167dd7d4b1833
workflow graph Detect DoCM variants

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: 0fae6bb8a15c634b054ec747e31bdfbc67954c92
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f
workflow graph Varscan Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: 0fae6bb8a15c634b054ec747e31bdfbc67954c92
workflow graph vcf_to_aliquot_maf_wf.cwl

https://github.com/NCI-GDC/aliquot-maf-cwl.git

Path: vcf-to-aliquot-maf/vcf_to_aliquot_maf_wf.cwl

Branch/Commit ID: 55208b599911427b229a003207901d2fa30054bc
workflow graph scatter-valuefrom-wf1.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-wf1.cwl

Branch/Commit ID: 551d58d409ef2a0fa2e3ab93b85167dd7d4b1833
workflow graph taxcheck.cwl

Perform taxonomic identification tasks on an input genome

https://github.com/ncbi/pgap.git

Path: taxcheck.cwl

Branch/Commit ID: f3bc91cf1320f75967ec2719b1506b75f23cb4b6
workflow graph kmer_seq_entry_extract_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl

Branch/Commit ID: 8761d0526f932dea879403d51251316ef331f082
workflow graph metabarcode (gene amplicon) analysis for fastq files

protein - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/metabarcode-fasta.workflow.cwl

Branch/Commit ID: 721aaf285e1848c3c52da38a1fed95192aeff8f4