Explore Workflows

https://github.com/EOSC-LOFAR/presto-cwl.git

Path: birds.cwl

Branch/Commit ID: master

RNA-seq 04 quantification

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl

Branch/Commit ID: master

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/svonworl/oxog-dockstore-tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: master

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl

Branch/Commit ID: 1.0.5

Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: sratoolkit/prefetch_fastq.cwl

Branch/Commit ID: release

https://github.com/abessiari/hello_world.git

Path: hello_world.cwl

Branch/Commit ID: demo

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_process.cwl

Branch/Commit ID: develop

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-test-files-pack.cwl

Branch/Commit ID: master

Packed ID: main

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: dev

This workflow execute peak caller and QC from ChIP-exo for single-end samples with no P-Value inflection

https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak_caller-SE-no_inflection.cwl

Branch/Commit ID: master