Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph predict-workflow.cwl

https://github.com/Duke-GCB/iMADS-worker.git

Path: predict_service/predict-workflow.cwl

Branch/Commit ID: master
workflow graph module-1.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/module-1.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5301/workflow.cwl

Branch/Commit ID: main
workflow graph hi-c-processing-parta-juicer.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-parta-juicer.cwl

Branch/Commit ID: dev2
workflow graph Alignment without BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl

Branch/Commit ID: master
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: develop
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-03-dada2.cwl
workflow graph if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/toolkit/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

Branch/Commit ID: 0.3.2
workflow graph workflow1_11.cwl#QualityFilterOuter.cwl

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: QualityFilterOuter.cwl
workflow graph wgs alignment with qc

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_alignment.cwl

Branch/Commit ID: toil_compatibility