Workflow: lobSTR-workflow.cwl

Fetched 2020-08-14 17:40:11 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Requires:

Inputs

ID Type Title Doc
reference File
rg-sample String
p1 File[] (Optional)
p2 File[] (Optional)
output_prefix String
rg-lib String
strinfo File
noise_model File

Steps

ID Runs Label Doc
allelotype
allelotype.cwl (CommandLineTool)
samsort
samtools-sort.cwl (CommandLineTool)
lobSTR
lobSTR-tool.cwl (CommandLineTool)
lobSTR
samindex
samtools-index.cwl (CommandLineTool)

Outputs

ID Type Label Doc
vcf File
vcf_stats File
bam_stats File
bam File
Permalink: https://w3id.org/cwl/view/git/17b65ea19d81527090fded62ffa0e1ba3b25d561/workflows/lobSTR/lobSTR-workflow.cwl