Workflow: lobSTR-workflow.cwl

Fetched 2022-08-09 20:59:41 GMT
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Requires:

Inputs

ID Type Title Doc
p1 File[] (Optional)
p2 File[] (Optional)
rg-lib String
strinfo File
reference File
rg-sample String
noise_model File
output_prefix String

Steps

ID Runs Label Doc
lobSTR
lobSTR-tool.cwl (CommandLineTool)
lobSTR
samsort
samtools-sort.cwl (CommandLineTool)
samindex
samtools-index.cwl (CommandLineTool)
allelotype
allelotype.cwl (CommandLineTool)

Outputs

ID Type Label Doc
bam File
vcf File
bam_stats File
vcf_stats File
Permalink: https://w3id.org/cwl/view/git/17b65ea19d81527090fded62ffa0e1ba3b25d561/workflows/lobSTR/lobSTR-workflow.cwl