Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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platanusB-default.cwl
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https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/platanusB-default.cwl Branch/Commit ID: master |
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WGS QC workflow nonhuman
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: master |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.6 |
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wf_bam_to_bigwig.cwl
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https://github.com/YeoLab/sailor.git
Path: cwl/wf_bam_to_bigwig.cwl Branch/Commit ID: master |
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SetArrayElementCoordinates
Transform array element coordinates into the coordinate system required by the simulation pipeline (i.e., CORSIKA system). |
https://gitlab.desy.de/gernot.maier/cwlsandbox.git
Path: workflows/SetArrayElementCoordinates.cwl Branch/Commit ID: main |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: master |
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strelka workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: master |
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fasttree-compare.cwl
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https://github.com/IFB-ElixirFr/ReproHackathon.git
Path: reprohackathon2/cwl/fasttree-compare.cwl Branch/Commit ID: master |
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kf-cram2gvcf-custom.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/kf-cram2gvcf-custom.cwl Branch/Commit ID: dev |
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star_samtools_stringtie-prepDE-DESeq2.htseq-dexseq.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_stringtie-prepDE-DESeq2.htseq-dexseq.cwl Branch/Commit ID: master |
