Workflow: post-proccessing-go-pfam-stats-subwf.cwl

Fetched 2025-02-18 06:18:24 GMT
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Inputs

ID Type Title Doc
cds File
rna File
fasta File
ko_file File
IPS_table File
go_config File (Optional)
ips_header String
diamond_table File (Optional)
hmmscan_table File
diamond_header String (Optional)
hmmsearch_header String
antismash_geneclusters_txt File (Optional)

Steps

ID Runs Label Doc
pfam
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/tools/Pfam-Parse/pfam_annotations.cwl (CommandLineTool)
Parse Pfam hits from Interpro annotation output
chunking_tsv
go_summary_step
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/tools/GO-slim/go_summary.cwl (CommandLineTool)
header_addition
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/utils/add_header/add_header.cwl (CommandLineTool)
write_summaries

Outputs

ID Type Label Doc
stats Directory
go_summary File
summary_ko File
summary_ips File
chunked_tsvs File[]
summary_pfam File
go_summary_slim File
summary_antismash File (Optional)
Permalink: https://w3id.org/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/workflows/subworkflows/functional-annotation/post-proccessing-go-pfam-stats-subwf.cwl