- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
cds | File | ||
rna | File | ||
fasta | File | ||
ko_file | File | ||
IPS_table | File | ||
go_config | File (Optional) | ||
ips_header | String | ||
diamond_table | File (Optional) | ||
hmmscan_table | File | ||
diamond_header | String (Optional) | ||
hmmsearch_header | String | ||
antismash_geneclusters_txt | File (Optional) |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
pfam |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/tools/Pfam-Parse/pfam_annotations.cwl
(CommandLineTool)
|
Parse Pfam hits from Interpro annotation output | |
chunking_tsv | |||
go_summary_step |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/tools/GO-slim/go_summary.cwl
(CommandLineTool)
|
||
header_addition |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/utils/add_header/add_header.cwl
(CommandLineTool)
|
||
write_summaries |
../func_summaries.cwl
(Workflow)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
stats | Directory | ||
go_summary | File | ||
summary_ko | File | ||
summary_ips | File | ||
chunked_tsvs | File[] | ||
summary_pfam | File | ||
go_summary_slim | File | ||
summary_antismash | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/workflows/subworkflows/functional-annotation/post-proccessing-go-pfam-stats-subwf.cwl