Workflow: post-proccessing-go-pfam-stats-subwf.cwl
Fetched 2026-04-15 06:51:22 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| cds | File | ||
| rna | File | ||
| fasta | File | ||
| ko_file | File | ||
| IPS_table | File | ||
| go_config | File (Optional) | ||
| ips_header | String | ||
| diamond_table | File (Optional) | ||
| hmmscan_table | File | ||
| diamond_header | String (Optional) | ||
| hmmsearch_header | String | ||
| antismash_geneclusters_txt | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| pfam |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/tools/Pfam-Parse/pfam_annotations.cwl
(CommandLineTool)
|
Parse Pfam hits from Interpro annotation output | |
| chunking_tsv | |||
| go_summary_step |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/tools/GO-slim/go_summary.cwl
(CommandLineTool)
|
||
| header_addition |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/utils/add_header/add_header.cwl
(CommandLineTool)
|
||
| write_summaries |
../func_summaries.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| stats | Directory | ||
| go_summary | File | ||
| summary_ko | File | ||
| summary_ips | File | ||
| chunked_tsvs | File[] | ||
| summary_pfam | File | ||
| go_summary_slim | File | ||
| summary_antismash | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/workflows/subworkflows/functional-annotation/post-proccessing-go-pfam-stats-subwf.cwl
