Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	metabarcode (gene amplicon) analysis for fastq files protein - qc, preprocess, annotation, index, abundance	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/metabarcode-fasta.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e
	step-valuefrom-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/step-valuefrom-wf.cwl Branch/Commit ID: 50251ef931d108c09bed2d330d3d4fe9c562b1c3
	RNA-seq (VCF) alelle specific pipeline for paired-end data Allele specific RNA-Seq (using vcf) paired-end workflow	https://github.com/datirium/workflows.git Path: workflows/allele-vcf-rnaseq-pe.cwl Branch/Commit ID: 7518b100d8cbc80c8be32e9e939dfbb27d6b4361
	tindaisy-hotspot.cwl	https://github.com/ding-lab/TinDaisy.git Path: cwl/workflows/tindaisy-hotspot.cwl Branch/Commit ID: e60b00da50d6479bf0a943c258d11dbf01203265
	allele-alignreads-se-pe.cwl Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted.	https://github.com/datirium/workflows.git Path: subworkflows/allele-alignreads-se-pe.cwl Branch/Commit ID: 00ced0fc44ceeb3495e891232e1000235e56ee6b
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: f997d13af87216e9b5048c732a511053c7ba714c
	count-lines11-null-step-wf-noET.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/count-lines11-null-step-wf-noET.cwl Branch/Commit ID: 50251ef931d108c09bed2d330d3d4fe9c562b1c3
	xenbase-sra-to-fastq-pe.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-sra-to-fastq-pe.cwl Branch/Commit ID: 00ced0fc44ceeb3495e891232e1000235e56ee6b
	indexing_bed	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: b62c7bfcf5eb7ac3c1ed06879200fdf5db947e4b
	Hello World Outputs a message using echo	https://github.com/common-workflow-library/legacy.git Path: workflows/hello/hello.cwl Branch/Commit ID: 767d700e602805112a4c953d166e570cddfa2605