Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
validate_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.5.0_test |
|
|
|
trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3bb03c9b |
|
|
|
download_pheno.cwl
|
https://github.com/Christensen-Lab-Dartmouth/PyMethylProcess.git
Path: cwl/workflows/download_pheno.cwl Branch/Commit ID: master |
|
|
|
rest.cwl
|
https://github.com/yuandou168/FL_workflows.git
Path: workflows/rest.cwl Branch/Commit ID: main |
|
|
|
wf_get_peaks_nostats_se.cwl
|
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_nostats_se.cwl Branch/Commit ID: master |
|
|
|
QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
|
|
|
kf-cram2gvcf_calc_contam.cwl
|
https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/kf-cram2gvcf_calc_contam.cwl Branch/Commit ID: dev |
|
|
|
exome alignment and germline variant detection
|
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: low-vaf |
|
|
|
facets-suite-workflow.cwl
Workflow for running the facets suite workflow on a single tumor normal pair Includes handling of errors in case execution fails for the sample pair |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/facets-suite-workflow.cwl Branch/Commit ID: master |
|
|
|
topmed-alignment.cwl
|
https://github.com/DataBiosphere/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: 1.32.0 |
