Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: 5dc7c5c
workflow graph hisat2-cufflinks_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl

Branch/Commit ID: master
workflow graph createindex_singlevirus.cwl

https://github.com/yyoshiaki/virtus.git

Path: workflow/createindex_singlevirus.cwl

Branch/Commit ID: master
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 0fed1c9
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: master
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/illumination_first_stitching.cwl

Branch/Commit ID: 16794b6
workflow graph Genome conversion and annotation

Workflow for genome annotation from EMBL format

 https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_sapp_microbes.cwl

Branch/Commit ID: master
workflow graph qa_check_subwf.cwl

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: develop
workflow graph A workflow that aligns a fasta file and provides statistics on the SAM file

A workflow that aligns a fasta file and provides statistics on the SAM file

 https://github.com/dockstore/bcc2020-training.git

Path: cwl-training/exercise3/solution/align_and_metrics.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: master