- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/master/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
seqids | File | ||
asn_cache | Directory | ||
db_gencode | Integer | ||
blastdb_dir | Directory | ||
uniColl_asn_cache | Directory |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
gpx_qsubmit |
gpx_qsubmit_seqids.cwl
(CommandLineTool)
|
Seed Protein Alignments, scatter | |
tblastn_wnode |
tblastn_wnode_db.cwl
(CommandLineTool)
|
Seed Protein Alignments, execute | |
gpx_make_outputs |
gpx_make_outputs.cwl
(CommandLineTool)
|
Seed Protein Alignments, gather |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/4ffbad9ffeab15ec8af5f6f91bd352ef96d1ef77/protein_alignment/wf_seed_seqids.cwl