Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph genomics-workspace-genome.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl

Branch/Commit ID: 7198756b4b1519d102178042924671bd677e9b17
workflow graph Convert FastJs to npy arrays for gVCF input

https://github.com/curoverse/l7g.git

Path: cwl-version/masterworkflow/fastj2npy-wf.cwl

Branch/Commit ID: cdfe9178ad4e481d2391cd2da74b82d66a61b0bb
workflow graph Create NumPy arrays by tile path from cgfs, merge all NumPy arrays into single array

https://github.com/curoverse/l7g.git

Path: cwl-version/npy/createnpy-wf.cwl

Branch/Commit ID: cdfe9178ad4e481d2391cd2da74b82d66a61b0bb
workflow graph mutect parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/mutect.cwl

Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086
workflow graph Workflow to validate the the gVCF to cgf conversion

https://github.com/curoverse/l7g.git

Path: cwl-version/checks/check-cgf/gvcf/check-cgf-gvcf-wf.cwl

Branch/Commit ID: cdfe9178ad4e481d2391cd2da74b82d66a61b0bb
workflow graph import_include_test.cwl

https://github.com/wshands/CWL1.2Test.git

Path: import_include_test.cwl

Branch/Commit ID: c6b569882d4791ae28df4ee3b07a443e41fbff26
workflow graph taxonomy_check_16S

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: 0514ffe248dd11068a3f2268bc67b6ce5ab051d2
workflow graph gcaccess_from_list

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: 33414c888997d558bdcb558ca33c3a728a3e6143
workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
workflow graph Cellranger reanalyze - reruns secondary analysis performed on the feature-barcode matrix

Devel version of Single-Cell Cell Ranger Reanalyze ================================================== Workflow calls \"cellranger aggr\" command to rerun secondary analysis performed on the feature-barcode matrix (dimensionality reduction, clustering and visualization) using different parameter settings. As an input we use filtered feature-barcode matrices in HDF5 format from cellranger count or aggr experiments. Note, we don't pass aggregation_metadata from the upstream cellranger aggr step. Need to address this issue when needed.

 https://github.com/datirium/workflows.git

Path: workflows/cellranger-reanalyze.cwl

Branch/Commit ID: 564156a9e1cc7c3679a926c479ba3ae133b1bfd4