Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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blastp_wnode_struct
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
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Alignment without BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 992f84a959e1776acf3be77d2ca15fe11fa8673d |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496 |
