Explore Workflows

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/assembly/change_formats_and_names.cwl

Branch/Commit ID: eosc-life-gos

https://github.com/screx/cwl-tutorial.git

Path: bioinformatics/tools/workflow.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: f993cad

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/search.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git

Path: _includes/cwl/two-step-workflow.cwl

Branch/Commit ID: gh-pages

Single-cell Reference Indices Builds a Cell Ranger and Cell Ranger ARC compatible reference folders from the custom genome FASTA and gene GTF annotation files

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-ref-indices-wf.cwl

Branch/Commit ID: main

RNA-seq 04 quantification

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-revstranded.cwl

Branch/Commit ID: master

Single-cell Multiome ATAC and RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell Multiome ATAC and RNA-Seq datasets.

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-analyze-wf.cwl

Branch/Commit ID: main

This workflow merge BAM files per condition in parallel

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/merge-bam-parallel.cwl

Branch/Commit ID: master

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520108.cwl

Branch/Commit ID: main