Workflow: Bacterial Annotation (two-pass)

Fetched 2022-01-20 07:44:39 GMT
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Inputs

ID Type Title Doc
asn_cache Directory
inseq File
hmms_tab File
uniColl_cache Directory
hmm_hits File
hmm_path Directory

Steps

ID Runs Label Doc
protein_extract
protein_extract.cwl (CommandLineTool)
Extract ORF Proteins
bacterial_hit_mapping
bacterial_hit_mapping.cwl (CommandLineTool)
Map HMM Hits
get_off_frame_orfs
get_off_frame_orfs.cwl (CommandLineTool)
Get off-frame ORFs
gp_getorf
gp_getorf.cwl (CommandLineTool)
Get ORFs
hmmsearch
wf_hmmsearch.cwl (Workflow)
Search All HMMs I

Outputs

ID Type Label Doc
aligns File
Permalink: https://w3id.org/cwl/view/git/21baa197e2c87a71e48794cef96d24c52518a99c/bacterial_annot/wf_bacterial_annot.cwl