Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs and HISAT alignments	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: downsample_and_recall
	SPRM pipeline	https://github.com/hubmapconsortium/sprm.git Path: pipeline.cwl Branch/Commit ID: 62d3a80
	EMG assembly for paired end Illumina	https://github.com/FarahZKhan/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master
	collate_unique_SSU_headers.cwl	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 71d9c83
	EMG pipeline v3.0 (paired end version)	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: c1f8b22
	if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: 0.4.1
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: downsample_and_recall
	cond-wf-009.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/conditionals/cond-wf-009.cwl Branch/Commit ID: main
	snp_callers_workflow.cwl A workflow for running MuSe, MuTect, SomaticSniper, and Pindel. See [the github repository](https://github.com/BD2KGenomics/dockstore_workflow_snps) for details.	https://github.com/bd2kgenomics/dockstore_workflow_snps.git Path: snp_callers_workflow.cwl Branch/Commit ID: master
	workflow.cwl	https://github.com/mr-c/scalability-reproducibility-chapter.git Path: CWL/workflow.cwl Branch/Commit ID: CWL

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