Workflow: id_to_json_workflow2.cwl

Fetched 2021-01-17 21:03:06 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
password String
workspace String workspace UUID or name
mapping File
query File SQL query to run
project String project UUID, or name within the given 'workspace'
tags File
username String

Steps

ID Runs Label Doc
map_adaptive_to_AIRR
mapping.cwl (CommandLineTool)
convert_to_AIRR_Repertoire_JSON
tsv_to_json.cwl (CommandLineTool)

Based upon scripts/tsv_to_json.py by Artem Kushner, Laura Gutierrez Funderburk

download_adaptive_study
downloader2.cwl (CommandLineTool)

This CWL description of the iseq downloader tool doesn't require the user to construct a \".iseq\" credentials file; it assembles the credentials file for them.

Outputs

ID Type Label Doc
results File [format]
Permalink: https://w3id.org/cwl/view/git/3fa8eb2ccbd64e1e9731aa431156178077080f61/cwl/id_to_json_workflow2.cwl