Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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qiime2 DADA2 detect/correct paired sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-03-dada2-paired.cwl |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines9-wf-noET.cwl Branch/Commit ID: main |
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assembly-wf--v.5-cond.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/assembly-wf--v.5-cond.cwl Branch/Commit ID: master |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 9225fa2 |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.0.6 |
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snpeff-workflow.cwl
Annotate variants provided in a gziped VCF using SnpEff |
https://github.com/andrewjesaitis/cwl-tutorial.git
Path: snpeff-workflow.cwl Branch/Commit ID: master |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: master |
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sc_atac_seq_prep_process_init.cwl
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: sc-atac-seq-pipeline/steps/sc_atac_seq_prep_process_init.cwl Branch/Commit ID: 14985c9 |
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workflow.cwl
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https://github.com/reanahub/reana-demo-root6-roofit.git
Path: workflow/cwl/workflow.cwl Branch/Commit ID: master |
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collate_unique_rRNA_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_rRNA_headers.cwl Branch/Commit ID: e1b0fce |
