Workflow: snpeff-workflow.cwl
Fetched 2025-11-01 12:57:18 GMT
Verified with cwltool version 3.1.20221201130942
Annotate variants provided in a gziped VCF using SnpEff
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| genome | String | ||
| infile | File |
gzip VCF file to annotate |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gunzip |
gunzip.cwl
(CommandLineTool)
|
||
| snpeff |
snpeff.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| outfile | File | ||
| genesfile | File | ||
| statsfile | File |
Permalink:
https://w3id.org/cwl/view/git/e1c4c28dcf173116e38d911df5cf2e9a22b2cfb8/snpeff-workflow.cwl
