Workflow: snpeff-workflow.cwl

Fetched 2020-04-08 14:55:49 GMT

Annotate variants provided in a gziped VCF using SnpEff

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Inputs

ID Type Title Doc
genome String
infile File

gzip VCF file to annotate

Steps

ID Runs Label Doc
gunzip
gunzip.cwl (CommandLineTool)
snpeff
snpeff.cwl (CommandLineTool)

Outputs

ID Type Label Doc
genesfile File
statsfile File
outfile File
Permalink: https://w3id.org/cwl/view/git/e1c4c28dcf173116e38d911df5cf2e9a22b2cfb8/snpeff-workflow.cwl