Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG pipeline v3.0 (paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
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QIIME2 Step 1 paired end sequences
QIIME2 Import and Demux Step 1 paired end sequences |
https://github.com/bespin-workflows/16s-qiime2.git
Path: 16s-step1-import-demux-paired.cwl Branch/Commit ID: develop |
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qa_check_subwf.cwl
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: qa_check_subwf.cwl Branch/Commit ID: develop |
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count-lines11-extra-step-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines11-extra-step-wf-noET.cwl Branch/Commit ID: main |
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preprocessAndCluster.cwl
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https://github.com/Epigenomics-Screw/Screw.git
Path: cwl/preprocessAndCluster.cwl Branch/Commit ID: scatter |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 43d2fb8 |
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03-map-pe.cwl
ATAC-seq 03 mapping - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl Branch/Commit ID: master |
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timelimit2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/timelimit2-wf.cwl Branch/Commit ID: main |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: b174aec5dba5524367061a2c60472c318430f4f5 |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: master |
