Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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inpdir_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inpdir_update_wf.cwl Branch/Commit ID: main |
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Example of setting up a simulation system
Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI). |
https://github.com/bioexcel/biobb_wf_cwl_tutorial.git
Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl Branch/Commit ID: master |
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pipeline-bam2vcf-distr.cwl
DNAseq pipeline from bam to vcf in distributed mode |
https://github.com/Sentieon/Sentieon-cwl.git
Path: pipeline/pipeline-bam2vcf-distr.cwl Branch/Commit ID: master |
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main-somatic-giab-mix.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: somatic-giab-mix/somatic-giab-mix-workflow/main-somatic-giab-mix.cwl Branch/Commit ID: master |
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stage.cwl
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https://github.com/NCI-GDC/vep-cwl.git
Path: v102/workflows/subworkflows/stage.cwl Branch/Commit ID: master |
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align-texts-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/align-texts-wf.cwl Branch/Commit ID: master |
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methylCtools_trim_align_merge_sort_dedup.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/methylCtools/tools/methylCtools_trim_align_merge_sort_dedup.cwl Branch/Commit ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 1b0851e |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: test |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
