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Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/leipzig/2020-covid-19-bh.git

Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Branch/Commit ID: main

Outputs a message using echo

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/hello/hell_17.cwl

Branch/Commit ID: master

Downloads data based on an array of strings representing rest urls and a curl download workflow.

https://github.com/andrejsim/epos-cwl-workflows.git

Path: epos_accept_url_array_scatter.cwl

Branch/Commit ID: master

https://github.com/nigyta/rice_reseq.git

Path: workflows/test_samtools.cwl

Branch/Commit ID: master

https://github.com/sbg/sbg_dockstore_tools.git

Path: gtex-rnaseq-pipeline/rna-seq-pipeline.cwl

Branch/Commit ID: master

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http_pdc.cwl

Branch/Commit ID: 1.1

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 8515542

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/bwameth/bwameth_mulitlib_start_with_trimmed.cwl

Branch/Commit ID: main

Outputs a message using echo

https://github.com/puentesdiaz/workflows.git

Path: workflows/hello/hello.cwl

Branch/Commit ID: master

https://github.com/NLeSC/scriptcwl.git

Path: scriptcwl/examples/add_multiply_example.cwl

Branch/Commit ID: master