Explore Workflows
View already parsed workflows here or click here to add your own
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msa.cwl
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https://github.com/CERIT-SC/fireprot.git
Path: msa.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: develop |
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conflict-wf.cwl#collision
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/conflict-wf.cwl Branch/Commit ID: master Packed ID: collision |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: d4e5e53 |
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Unaligned to aligned BAM
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: low-vaf |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: f6b5196 |
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cond-wf-002.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-002.cwl Branch/Commit ID: main |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/Barski-lab/workflows.git
Path: subworkflows/heatmap-prepare.cwl Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master |
