Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph STAR-Alignment-PE-circRNA

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-default.cwl

Branch/Commit ID: master
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: master
workflow graph module-2.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/module-2.cwl

Branch/Commit ID: master
workflow graph 5S-from-tablehits.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 43d2fb8
workflow graph Non-Coding Bacterial Genes

https://github.com/ncbi/pgap.git

Path: bacterial_noncoding/wf_bacterial_noncoding.cwl

Branch/Commit ID: test
workflow graph pipeline_step4.cwl

https://github.com/Gibbsdavidl/CWL_scatter_example.git

Path: pipeline_step4.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs-nore-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nore-nonorm.cwl

Branch/Commit ID: master
workflow graph indexing_bed

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/indexing_bed.cwl

Branch/Commit ID: 3bb03c9b
workflow graph default-wf5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-wf5.cwl

Branch/Commit ID: main
workflow graph compile1.cwl#main

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: master

Packed ID: main