Explore Workflows

https://github.com/EOSC-LOFAR/presto-cwl.git

Path: birds.cwl

Branch/Commit ID: visualise

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/post_freebayes.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/scatter-wf2.cwl

Branch/Commit ID: master

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/duplicated_readgroup_fix.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: fa86fce

https://github.com/rdocking/sgseq_cwl.git

Path: cwl/build_splice_variant_graphs_workflow.cwl

Branch/Commit ID: master

Reverse the lines in a document, then sort those lines.

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/revsort.cwl

Branch/Commit ID: master

run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode

https://github.com/sentieon/sentieon-cwl.git

Path: stage/dedup-3-pass-distr.cwl

Branch/Commit ID: master

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: bwa/BWA-Mem2-paired.cwl

Branch/Commit ID: release

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: master