Workflow: sgseq_cwl.cwl
Fetched 2025-05-15 06:46:26 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam_file | File[] | ||
| gtf_file | File | ||
| chromosome | String[] | ||
| sample_name | String[] | ||
| output_prefix | String | ||
| splice_graph_type | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| collect_bam_stats |
collect_bam_stats_workflow.cwl
(Workflow)
|
||
| predict_tx_features |
predict_tx_features_workflow.cwl
(Workflow)
|
||
| build_splice_variant_graphs |
build_splice_variant_graphs_workflow.cwl
(Workflow)
|
||
| collect_feature_and_variant_counts |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| merged_sgfeature_counts | File | ||
| merged_sgvariant_counts | File |
Permalink:
https://w3id.org/cwl/view/git/6e92e70511fa72f6aaef75b54bcc7d1ebbe95b65/cwl/sgseq_cwl.cwl
