Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph contaminant_cleanup

This workflow detect and remove contamination from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contaminant-cleanup.cwl

Branch/Commit ID: master
workflow graph wf_clipseqcore_trim_partial_se_1barcode.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_trim_partial_se_1barcode.cwl

Branch/Commit ID: master
workflow graph mixed_library_metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/mixed_library_metrics.cwl

Branch/Commit ID: 1.1
workflow graph pipeline.cwl

https://github.com/nlesc-sherlock/deeplearning.git

Path: CWLworkflow/pipeline.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/vavien/bi-cwl.git

Path: workflow.cwl

Branch/Commit ID: main
workflow graph workflow.cwl

https://github.com/Sage-Bionetworks-Challenges/Anti-PD1-DREAM-Infrastructure.git

Path: workflow.cwl

Branch/Commit ID: master
workflow graph tinyrna_wf.cwl

https://github.com/MontgomeryLab/tinyRNA.git

Path: tiny/cwl/workflows/tinyrna_wf.cwl

Branch/Commit ID: master
workflow graph samtoolsW.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: samtoolsW.cwl

Branch/Commit ID: release
workflow graph chipseq_tf_align.cwl

https://github.com/bxlab/vision-workflows.git

Path: chipseq_tf_align.cwl

Branch/Commit ID: master
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 3bb03c9b