Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f6b5196 |
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Initial CNVkit analysis
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/cnvkit_initial_analysis.cwl Branch/Commit ID: master |
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rw-distr.cwl
run scatter-gather for rw stage |
https://github.com/sentieon/sentieon-cwl.git
Path: stage/rw-distr.cwl Branch/Commit ID: master |
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GSC Paired Jobs
Serial combination of KnowEnG tools |
https://github.com/KnowEnG-Research/cwl-specification.git
Path: code/workflow.gsc.cwl Branch/Commit ID: master |
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mutect parallel workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: downsample_and_recall |
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RSeQC workflow or single-end samples
This workflow runs the RSeQC quality control workflow |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl Branch/Commit ID: master |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fasta.workflow.cwl Branch/Commit ID: master |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.4.1 |
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scatter-valuefrom-inputs-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-inputs-wf1.cwl Branch/Commit ID: master |
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QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
