Explore Workflows
View already parsed workflows here or click here to add your own
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.0.6 |
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wf_get_peaks_scatter_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_se.cwl Branch/Commit ID: master |
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ST520107.cwl
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https://github.com/Marco-Salvi/cwl-test.git
Path: wf5201/ST520107.cwl Branch/Commit ID: main |
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Unaligned BAM to BQSR and VCF
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https://github.com/markrobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: workflow.cwl_2 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines9-wf-noET.cwl Branch/Commit ID: main |
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module-2
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-2.cwl Branch/Commit ID: dev |
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step-valuefrom2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom2-wf.cwl Branch/Commit ID: main |
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packed.cwl#wflow_all_mc.cwl
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https://github.com/mr-c/cwltests.git
Path: cwl/packed.cwl Branch/Commit ID: pack_test Packed ID: wflow_all_mc.cwl |
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wf_full_IDR_pipeline_1input_sample.cwl
This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_1input.cwl |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input_sample.cwl Branch/Commit ID: master |
