Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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process-ddf.cwl
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https://git.astron.nl/RD/VLBI-cwl.git
Path: workflows/process-ddf.cwl Branch/Commit ID: 9c5c9a126852b875eaa8dce53e76a9b4c0b1dc5e |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: a33bc8a |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-03-dada2.cwl |
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Chunked version of phmmer-v3.2.cwl
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: assembly |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.5 |
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collect_pair_files.cwl
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https://github.com/mskcc/roslin-cwl.git
Path: modules/pair/collect_pair_files.cwl Branch/Commit ID: master |
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CompPASS-Plus_workflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: CompPASS-Plus_workflow.cwl Branch/Commit ID: master |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: master |
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sc_atac_seq_initial_analysis.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: 06aeffe |
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count-lines6-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines6-wf.cwl Branch/Commit ID: main |
