Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exomeseq-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-02-variantdiscovery.cwl

Branch/Commit ID: gatk4-fixes
workflow graph snapanalysis_setup_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snapanalysis_setup_and_analyze.cwl

Branch/Commit ID: bb023f9
workflow graph iwdr_with_nested_dirs.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/iwdr_with_nested_dirs.cwl

Branch/Commit ID: main
workflow graph samples_fillout_workflow.cwl

Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_workflow.cwl

Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13
workflow graph protein annotation

Proteins - predict, filter, cluster, identify, annotate

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-filter-annotation.workflow.cwl

Branch/Commit ID: master
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 43d2fb8
workflow graph flagging.cwl

https://github.com/ska-sa/den.git

Path: cwl/workflows/flagging.cwl

Branch/Commit ID: master
workflow graph DeriveArrayElementCoordinates

Derive array element coordinates in the simulation pipeline coordinate system.

 https://github.com/gammasim/workflows.git

Path: workflows/DeriveArrayElementCoordinates.cwl

Branch/Commit ID: main
workflow graph pindel parallel workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: master
workflow graph bam to trimmed fastqs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl

Branch/Commit ID: downsample_and_recall