Explore Workflows

https://github.com/kevinsayers/cwl_rnatoy.git

Path: rnatoy.cwl

Branch/Commit ID: master

https://github.com/cancerit/cgpRna.git

Path: cwls/cgpRna_with_infuse.cwl

Branch/Commit ID: feature/test_for_cwlviewer

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: f993cad

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_tool.cwl

Branch/Commit ID: develop

https://github.com/stain/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: no-id

Runs ChIP-Seq BioWardrobe basic analysis with single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-chipseq-se.cwl

Branch/Commit ID: master

https://github.com/lukasheinrich/cwltests.git

Path: cwl/wflow_all_mc.cwl

Branch/Commit ID: master

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/genomel_cohort_genotyping.cwl

Branch/Commit ID: master

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-store-result.cwl

Branch/Commit ID: master