Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: master |
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host_workflow.cwl
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https://github.com/azzaea/tsts.git
Path: cwl/host_workflow.cwl Branch/Commit ID: master |
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wf_trim_and_map_pe.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
https://github.com/yeolab/eclip.git
Path: cwl/wf_trim_and_map_pe.cwl Branch/Commit ID: master |
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count-lines8-wf-noET.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines8-wf-noET.cwl Branch/Commit ID: master |
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composed_workflows.cwl
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https://github.com/giannisdoukas/CWLJNIKernel.git
Path: tests/cwl/composed_workflows.cwl Branch/Commit ID: master |
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bed_to_coverage_track.cwl
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https://github.com/CompEpigen/ATACseq_workflows.git
Path: CWL/workflow_modules/bed_to_coverage_track.cwl Branch/Commit ID: master |
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metrics-flow.cwl
Run metrics workflow |
https://github.com/sentieon/sentieon-cwl.git
Path: stage/metrics-flow.cwl Branch/Commit ID: master |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 72cf42a |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: a8abd0e |
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collate_unique_SSU_headers.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: caea457 |
