Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: 63f539ba60e91f0cb3ce7cda2c5da5c65525c375
workflow graph preprocessor_for_oxog.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: develop
workflow graph Detect Variants workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/FAIR-tools/workflow-description.git

Path: cwl/workflow.cwl

Branch/Commit ID: main
workflow graph fasta2taxa-plot

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/join-reads2reference2plot.cwl

Branch/Commit ID: master
workflow graph strelka workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: strelka/workflow.cwl

Branch/Commit ID: master
workflow graph beagle-imputation-per-region.cwl

https://github.com/hacchy1983/imputation-server-jp.git

Path: Workflows/beagle-imputation-per-region.cwl

Branch/Commit ID: main
workflow graph cram_to_bam workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: low-vaf
workflow graph completeWorkflow.cwl

https://github.com/h3abionet/h3abionet16S.git

Path: workflows-cwl/completeWorkflow.cwl

Branch/Commit ID: master
workflow graph Tumor-Only Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_detect_variants.cwl

Branch/Commit ID: ec45fad68ca10fb64d5c58e704991b146dc31d28