Explore Workflows

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/timelimit-wf.cwl

Branch/Commit ID: main

https://github.com/EBI-Metagenomics/CWL-binning.git

Path: workflows/binning.cwl

Branch/Commit ID: develop

create STAR index for mapping CAGE-Seq data (step 1: decompress reference genome fasta file, step 2: create STAR index)

https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/02_star_index_subworkflow.cwl

Branch/Commit ID: main

todo

https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/relabel-and-merge.cwl

Branch/Commit ID: master

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_trim_partial_se_1barcode.cwl

Branch/Commit ID: master

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/yeolab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: master

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/mixed_library_metrics.cwl

Branch/Commit ID: 1.0

https://github.com/AlexanderSenf/demo-workflows.git

Path: cwl/rare_diseases_workflow/workflow.cwl

Branch/Commit ID: v0.1

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 5dc7c5c

https://github.com/Kevin-Fang/recall-veritas-pgp.git

Path: unzip/unzipBAMs.cwl

Branch/Commit ID: master