Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.7 |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/leipzig/2020-covid-19-bh.git
Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
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steps.cwl
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https://github.com/DimitraPanou/scRNAseq-cwl.git
Path: steps.cwl Branch/Commit ID: 4e9c15b |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 0cf06f1 |
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Run genomic CMsearch
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: dev |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 0cd2d70 |
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Transcripts annotation workflow
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/create-vis-symlink-archive.git
Path: pipeline.cwl Branch/Commit ID: 6e55233 |
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GATK-v1.0-Workflow.cwl
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https://github.com/Johnnywang92/GATK-CWL-WorkFlow-201903.git
Path: GATK-v1.0-Workflow.cwl Branch/Commit ID: master |
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QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/bespin-workflows/16s-qiime2.git
Path: 16s-step3-alpha-beta-analysis.cwl Branch/Commit ID: develop |
