Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph preprocess.cwl

https://github.com/klimstef/testing-for-Haqseq.git

Path: cwl_s/preprocess.cwl

Branch/Commit ID: master
workflow graph kallisto-demo.cwl

https://github.com/alexbarrera/GGR-cwl.git

Path: workflows/workflows/kallisto-demo.cwl

Branch/Commit ID: master
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: main
workflow graph collate_unique_SSU_headers.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 9c57dba
workflow graph qiime2 demux sequences

Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-02-demux-emp-single.cwl

Branch/Commit ID: develop
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: master
workflow graph Workflow that executes the SBG L1 Workflow

https://github.com/unity-sds/sbg-workflows.git

Path: L1-to-L2-e2e.cwl

Branch/Commit ID: 1.1.1
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: master
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.6
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 16dd8ca