View already parsed workflows here or click here to add your own
Path: definitions/subworkflows/strelka_process_vcf.cwl
Branch/Commit ID: low-vaf
Path: workflow/rna-seq/rnaseq-star-rsem-pe/rnaseq-star-rsem-pe.cwl
Branch/Commit ID: main
Path: pindel/workflow.cwl
Branch/Commit ID: master
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups
Path: workflows/subworkflows/find_hotspots_in_normals.cwl
Path: definitions/pipelines/tumor_only_wgs.cwl
ATAC-seq pipeline - reads: PE
Path: v1.0/ATAC-seq_pipeline/pipeline-pe.cwl
Path: v1.0/v1.0/pass-unconnected.cwl
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl
Branch/Commit ID: No_filters_detect_variants
Mark duplicates
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl