Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	cnv_codex CNV CODEX calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 1.0.5
	gdc_rnaseq_main_workflow.cwl	https://github.com/NCI-GDC/gdc-rnaseq-cwl.git Path: rnaseq-star-align/subworkflows/gdc_rnaseq_main_workflow.cwl Branch/Commit ID: master
	varscan somatic workflow	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: master
	chksum_seqval_wf_interleaved_fq.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.2.2
	scatter-valuefrom-wf2.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/scatter-valuefrom-wf2.cwl Branch/Commit ID: master
	collate_unique_SSU_headers.cwl	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 43d2fb8
	zip_and_index_vcf.cwl This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.	https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0
	rRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: f6b5196
	ValidationWorkflowMissing This is a placeholder for a missing acceptance workflow.	https://github.com/gammasim/workflows.git Path: workflows/ValidationWorkflowMissing.cwl Branch/Commit ID: main
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: downsample_and_recall

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