Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph abc_step01

https://github.com/davidroberson/workflow-notebooks.git

Path: abc_enhancer_gene_prediction/abc-enchancer-gene-prediction-wf.cwl.steps/abc_step01.cwl

Branch/Commit ID: main
workflow graph hello-workflow.cwl

https://github.com/inab/hello-workflows.git

Path: cwl/hello-workflow.cwl

Branch/Commit ID: main
workflow graph 01-qc-pe.cwl

ChIP-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: master
workflow graph chksum_seqval_wf_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.2.1
workflow graph 5S-from-tablehits.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: master
workflow graph wf_trim_and_map_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se.cwl

Branch/Commit ID: master
workflow graph FragPipe: Filter - Quant - Report

This workflow takes the PeptideProphet, and the ProteinProphet output files, and applies a stringent False Discovery Rate (FDR) filtering. Peptide and proteins are filtered individually at 1% FDR. The high-quality PSMs, peptides, and proteins are then quantified using a label-free algorithm that uses the apex peak intensity as a measurement. Finally, the isobaric tags are quantified and annotated with the correct sample labels.

 https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-Filter-Quant-Report/fragpipe-filter-quant-report.cwl

Branch/Commit ID: main
workflow graph calculate_contamination_workflow.cwl

GATK4.1.2 Calculate tumor-normal contamination workflow

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: subworkflows/calculate_contamination_workflow.cwl

Branch/Commit ID: master
workflow graph workflow_select_shape.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/workflow_select_shape.cwl

Branch/Commit ID: master
workflow graph canine_annotation_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_annotation_module.cwl

Branch/Commit ID: master