Workflow: FragPipe: Filter - Quant - Report
Fetched 2024-04-25 00:56:24 GMT
Verified with cwltool version 3.1.20221201130942
This workflow takes the PeptideProphet, and the ProteinProphet output files, and applies a stringent False Discovery Rate (FDR) filtering. Peptide and proteins are filtered individually at 1% FDR. The high-quality PSMs, peptides, and proteins are then quantified using a label-free algorithm that uses the apex peak intensity as a measurement. Finally, the isobaric tags are quantified and annotated with the correct sample labels.
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Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| protxml | File (Optional) |
protXML file path |
|
| workspace_and_annotation | File[] | Workspace and Annotation Files |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| report_outputs | File[] (Optional) |
Permalink:
https://w3id.org/cwl/view/git/080063b7443c98bc378935e16f747f8c542c9521/FragPipe-Filter-Quant-Report/fragpipe-filter-quant-report.cwl
