Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5
workflow graph assemble.cwl

Assemble a set of reads using SKESA

https://github.com/ncbi/pgap.git

Path: assemble.cwl

Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5
workflow graph metabarcode (gene amplicon) analysis for fastq files

protein - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/metabarcode-fastq.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph metabarcode (gene amplicon) analysis for fastq files

protein - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/metabarcode-fasta.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph exomeseq.cwl#exomeseq-01-preprocessing.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-01-preprocessing.cwl
workflow graph Whole Exome Sequencing

Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: main
workflow graph exomeseq.cwl#exomeseq-03-organizedirectories.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-03-organizedirectories.cwl
workflow graph exomeseq.cwl#exomeseq-02-variantdiscovery.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-02-variantdiscovery.cwl
workflow graph exomeseq.cwl#exomeseq-00-prepare-reference-data.cwl

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-00-prepare-reference-data.cwl
workflow graph sc_atac_seq_process_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_process_and_analyze.cwl

Branch/Commit ID: 00c5e3ad729c1712945c69b58bd9868115d11bfd