Explore Workflows
View already parsed workflows here or click here to add your own
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wf_full_IDR_pipeline_2inputs_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_2inputs_scatter.cwl Branch/Commit ID: master |
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Trim and reformat reads (single and paired end version)
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 9c57dba |
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Dockstore.cwl
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https://github.com/briandoconnor/dockstore-workflow-md5sum.git
Path: Dockstore.cwl Branch/Commit ID: master |
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bird_scatter_values.cwl
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https://github.com/ReddyLab/bird-workflow.git
Path: 03_bird_scatter_values/bird_scatter_values.cwl Branch/Commit ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 71d9c83 |
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Gz_Fasta_GC_TRF_CpG.cwl
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https://github.com/EnsemblGSOC/tony-gsoc-2018.git
Path: workflow/Gz_Fasta_GC_TRF_CpG.cwl Branch/Commit ID: master |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl |
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checker_workflow_wrapping_workflow.cwl
This demonstrates how to wrap a \"real\" workflow with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git
Path: checker_workflow_wrapping_workflow.cwl Branch/Commit ID: develop |
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databkgmc.cwl
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https://github.com/lukasheinrich/cwltests.git
Path: cwl/databkgmc.cwl Branch/Commit ID: master |
