Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rhapsody_pipeline_2.0.cwl#VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl
workflow graph count-lines11-null-step-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-null-step-wf.cwl

Branch/Commit ID: main
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: 930a2cf
workflow graph map medium and long reads (> 100 bp) against reference genome

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: bwa/BWA-Mem2-single.cwl

Branch/Commit ID: release
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: master
workflow graph optimal-pipeline-xml.cwl

https://github.com/MaastrichtU-IDS/OptimAL.git

Path: workflow/optimal-pipeline-xml.cwl

Branch/Commit ID: master
workflow graph split-bams-by-strand-and-index.cwl

Split reads in a BAM file by strands and index forward and reverse output BAM files

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/quant/split-bams-by-strand-and-index.cwl

Branch/Commit ID: master
workflow graph wf_full_IDR_pipeline_2inputs_scatter.cwl

The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs_scatter.cwl

Branch/Commit ID: master
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: master
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 9c57dba