Workflow: qiime2 create feature visual summaries
Fetched 2024-11-23 20:07:21 GMT
Verified with cwltool version 3.1.20221201130942
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| sample_metadata | File | ||
| rep_seqs_artifact | File | ||
| feature_table_artifact | File | ||
| filter_feature_table_where | String | ||
| feature_table_summary_filename | String | ||
| filtered_table_filename_filename | String | ||
| feature_table_tabulation_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| filter_feature_table |
qiime2-step2-dada2-paired.cwl#feature-table-filter-samples.cwl
(CommandLineTool)
|
qiime2: Filter samples from table based on frequency and/or metadata | |
| feature_table_summarize |
qiime2-step2-dada2-paired.cwl#feature-table-summarize.cwl
(CommandLineTool)
|
qiime2: Generate visual and tabular summaries of a feature table | |
| feature_table_tabulation |
qiime2-step2-dada2-paired.cwl#feature-table-tabulate-seqs.cwl
(CommandLineTool)
|
qiime2: Generate tabular view of feature identifier to sequence mapping, including links to BLAST each sequence against the NCBI nt database |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| filtered_feature_table_artifact | File | ||
| feature_table_summarize_visualization | File | ||
| feature_table_tabulation_visualization | File |
Permalink:
https://w3id.org/cwl/view/git/e2dc95d4f12210359360d814382e7201d836dfcf/packed/qiime2-step2-dada2-paired.cwl?part=qiime2-04-features.cwl
