Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cond-wf-003_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-003_nojs.cwl

Branch/Commit ID: main
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: low-vaf
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/mr-c/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: fix_sbg_namespace
workflow graph WF6101.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: WF6101.cwl

Branch/Commit ID: remove-cycles
workflow graph A workflow that aligns a fasta file and provides statistics on the SAM file

A workflow that aligns a fasta file and provides statistics on the SAM file

 https://github.com/dockstore/bcc2020-training.git

Path: cwl-training/exercise3/solution/align_and_metrics_imports.cwl

Branch/Commit ID: master
workflow graph Chunked version of phmmer-v3.2.cwl

https://github.com/stain/workflow-is-cwl.git

Path: workflows/phmmer-v3.2-chunked-wf.cwl

Branch/Commit ID: avoid-spaces
workflow graph testTimeSIMLR.cwl

https://github.com/Gepiro/rCASCStreamFlow.git

Path: setting/testTimeSIMLR.cwl

Branch/Commit ID: main
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome_nonhuman.cwl

Branch/Commit ID: master
workflow graph count-lines8-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines8-wf.cwl

Branch/Commit ID: main
workflow graph pipeline-fastq2vcf-parallel-bwa.cwl

DNAseq pipeline from fastq to vcf

 https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-fastq2vcf-parallel-bwa.cwl

Branch/Commit ID: master