Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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genomel_cohort_genotyping.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/genomel_cohort_genotyping.cwl Branch/Commit ID: master |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 9225fa2 |
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testDirLayout.cwl
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https://github.com/klimstef/testing-for-Haqseq.git
Path: cwl_s/testDirLayout.cwl Branch/Commit ID: master |
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04-quantification-pe-revstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: master |
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qiime2 DADA2 detect/correct paired sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-03-dada2-paired.cwl Branch/Commit ID: develop |
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workflow.cwl
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https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git
Path: Workflows/PSD_workflow_bucket_2/workflow.cwl Branch/Commit ID: main |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-08-taxonomic-analysis.cwl |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5e82174 |
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umi duplex alignment fastq workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: downsample_and_recall |
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host.sort.workflow.cwl
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https://github.com/azzaea/cwl-scalability-vis.git
Path: host.sort.workflow.cwl Branch/Commit ID: main |
